Probing the mechanism of xanthine oxidase and 2-amino xanthine: an implication of energy, charge bond order and wave function.
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2018-06-01 https://doi.org/10.14419/ijac.v6i1.12175 -
Hyperuricemia, Molybdenum, Stepwise and Xanthine Oxidase. -
Abstract
Xanthine oxidase (XO) is an important molybdenum-containing enzyme catalyzing the hydroxylation of hypoxanthine to xanthine and xanthine to uricacid. The mechanistic action by which xanthine oxidase oxidizes purine derivatives is not well understood. A better understanding of the overall mechanism is supposed to enhance our ability to control the metabolic properties of potential drug molecules metabolized by this enzyme. In this work a model substrate, 2-Amino Xanthine has been used to study the mechanistic action of the enzyme. For this reason, the present theoretical work was intended to probe a unified mechanism for the oxidation of 2-Amino Xanthine by xanthine oxidase. Parameters like total electronic energy, Mulliken atomic charges, wave functions, and percent contribution of chemical fragments were generated using a DFT method employing B3LYP level of theory with 6-31G(d',p') basis set for nonmetals and LanL2DZ basis set for molybdenum. AOmix software package that employs single point energy output as an input file was employed for wave function and percent fragment analysis. From these result new reaction intermediates and plausible reaction mechanism root has been reported for reductive and oxidative half reaction using 2-Amino Xanthine as model substrate. In this work it can be concluded that a stepwise mechanistic route with hydrogen bonding reaction complex and active site resemble very rapid Mo (V) intermediate is most plausible.
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References
[1] Alfaro, F. J., and Jones, P.J., (2008). Studies on the mechanism of aldehyde oxidase and xanthine oxidase. J. Org. Chem., 73, 9469 – 9472. https://doi.org/10.1021/jo801053u.
[2] Bayse, A., C., (2009). Density-functional theory Models of Xanthine Oxidoreductase Activity: Comparison of Substrate Tautomerization and Protonation. Dalton Trans., 2306 – 2314. https://doi.org/10.1039/b821878a.
[3] Cao, H., Pauff, J., and Hille, R., (2011). Substrate Orientation and the Origin of Catalytic Power in Xanthine Oxidase. Indian. J. chem., 50, 355 - 362.
[4] Choi, Y. E., Stockert, A. L., Leimkuhler, S., Hille, R., (2004). Studies on the Mechanism of Action of Xanthine Oxidase. J. Inor. Biochem., 98, 841 – 848. https://doi.org/10.1016/j.jinorgbio.2003.11.010.
[5] Danijela A. Kostić, Danica S. Dimitrijević, Gordana S. Stojanović, Ivan R. Palić, Aleksandra S. ÄorÄ‘ević, and Jovana D. Ickovski, “Xanthine Oxidase: Isolation, Assays of Activity, and Inhibition,†Journal of Chemistry, vol. 2015, Article ID 294858, 8 pages, 2015. doi:10.1155/2015/294858. https://doi.org/10.1155/2015/294858 .
[6] Hille, R., (2006). Structure and Function of Xanthine Xxidoreductase. Eur. J. Inorg. Chem. 10, 1913 – 1926. https://doi.org/10.1002/ejic.200600087.
[7] Hille, R., Kim, H. J., and Hemann, C., (1993). Reductive Half-reaction of Xanthine Oxidase: Mechanistic Role of the Species Giving rise to the “rapid type 1 Molybdenum (V) Electron Paramagnetic Resonance Signal. Biochem., 32, 3973 - 3980. https://doi.org/10.1021/bi00066a018.
[8] Higgins, P., Dawson, J. and Walters, M., (2009). The Potential for Xanthine Oxidase Inhibition in the Prevention and Treatment of Cardiovascular and Cerebrovascular Disease. Cardiovascular Psychiatry and Neurology, 1-9. doi:10.1155/2009/282059. https://doi.org/10.1155/2009/282059.
[9] Ilich, P., and Hille, R., (1999). Mechanism of Formamide Hydroxylation Catalyzed By a Molybdenum Dithiolene Complex: A Model for Xanthine Xxidase Reactivity. J. Phys. Chem. B, 103, 5406-5412. https://doi.org/10.1021/jp9904825.
[10] Okamoto, K., Kusano, T., and Nishino,T., (2013). Chemical Nature and Reaction Mechanisms of the Molybdenum Cofactor of Xanthine Oxidoreductase. Current Pharmaceutical Design, 19, 2606-2614. https://doi.org/10.2174/1381612811319140010.
[11] Pauff, J. M., Cao, H., and Hille, R., (2008). Substrate Orientation and Catalysis at the Molybdenum Site in Xanthine Oxidase: Crystal Structures in Complex with Xanthine and Lumazine. J. Biol. Chem., 24, 1-17.
[12] Santos-Silva, T., T., Ferroni, F., Thapper, A., Marangon, J., Pablo, J. Gonzlez, J. P., Rizzi, C. A., Moura, I., Moura, G.J.J., Romao, J.M., Brondino, D.C., (2009). Kinetic, Structural, and EPR Studies Reveal That Aldehyde Oxidoreductase from Desulfovibrio Gigas Does Not Need a Sulï¬do Ligand For Catalysis and Give Evidence for A Direct Mo-C Interaction in A Biological System. J. Am. chem. soc., 131, 7990 - 7998. https://doi.org/10.1021/ja809448r.
[13] Zhang, X.H. and Wu, Y.D., (2005). A Theoretical Study on the Mechanism of the Reductive half-Reaction of Xanthine Oxidase. Inorg. Chem., 44, 1466-147. https://doi.org/10.1021/ic048730l.
[14] Zhang, Y., Cheng, H., Xu, J., Lu, L., (2016).Xanthine Oxidoreductase-An Important Functional Component of Differentiation, Apoptosis and Aggressiveness of Tumors. Cell Biology. 4, 24-30.
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How to Cite
Bitew, M. (2018). Probing the mechanism of xanthine oxidase and 2-amino xanthine: an implication of energy, charge bond order and wave function. International Journal of Advanced Chemistry, 6(1), 95-101. https://doi.org/10.14419/ijac.v6i1.12175Received date: 2018-04-26
Accepted date: 2018-05-19
Published date: 2018-06-01