Network analysis as a method of assessing terms in a dataset comprising eating disorders
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2018-03-18 https://doi.org/10.14419/ijet.v7i2.7.11079 -
Eating disorder, R programming, Term matrix, Word cloud, Clustering, Network analysis -
Abstract
Eating disorders are central reason of physical and psycho-social morbidity. Several factors have been identified as being associated with the prevalence and progression of eating disorders in humans. Scientific investigation was carried out to assess the usage of terms in manuscript titles of nearly 900 published articles followed by network analysis and network centralities using R programming. The tm package, term document matrix function was utilized to create a term document matrix (TDM) from the corpus. A binary word matrix comprising 17 terms was created based on higher probability of occurring a term in a column. An agglomerative hierarchical clustering technique using ward clustering algorithm was presented. A data frame from the TDM was created to store data and used to plot word cloud based on word frequencies. An undirected network graph was plotted based on terms that appeared in the term matrix. Centralization measures such as Degree centrality, Closeness, Eigenvector and betweenness Centrality were reported.
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References
[1] Jacobi, C., Hayward, C., de Zwaan, M., Kraemer, H. &Agras, W.S. (2004). Coming to terms with risk factors for eating disorders: Application of risk terminology and suggestions for a general taxonomy. Psychological Bulletin, 130, 1, 19-65.
[2] Jacobi, C. &Fittig, E. (2010). Psychosocial risk factors for eating disorders.In Agras, W.S. (Ed.), Oxford Handbook of Eating Disorders. Oxford University Press: N.Y.
[3] P.E. Slagboom and I. Meulenbelt. Organisation of the human genome and our tools for identifying disease genes. Biological Psychology 61 (2002) 11-31.
[4] Bulik CM, Devlin D et al. (2003b) Significant linkage on chromosome 10p in families with bulimia nervosa. Americal Journal of Human Genetics, 72: 200-7.
[5] Duman, R.S., 2002. Synaptic plasticity and mood disorders. Mol. Psychiatry 7, S29–S34][Coyle, J.T., Duman, R.S., 2003. Finding the intracellular signaling pathways affected by mood disorder treatments. Neuron 38, 157–160.
[6] Hashimoto, K., Shimizu, E., Iyo, M., 2004. Critical role of brain-derived neurotrophic factor in mood disorders. Brain Res. Brain Res. Rev. 45, 104–114.
[7] Nolwenn Le Meur and Robert Gentleman. Analyzing Biological Data Using R: Methods for Graphs and Networks. Chapter 19.
[8] Huber W, Carey VJ, Long L, Falcon S, Gentleman R. (2007) Graphs in molecular biology. BMC Bioinformatics, 8(6):S8.
[9] Castelo R, Roverato A. (2009) Reverse engineering molecular regulatory networks from microarray data with qp-graphs. J Computational Biol, 16(2):213–227.
[10] Le Meur N, Gentleman R. (2008) Modeling synthetic lethality. Genome Biol, 9(9):R135.
[11] http://www.malacards.org/
[12] Linton C. Freeman. "Visualizing Social Networks". Journal of Social Structure.
[13] Fruchterman, Thomas M. J.; Reingold, Edward M. (1991), "Graph Drawing by Force-Directed Placement", Software – Practice & Experience, Wiley, 21 (11): 1129–1164.
[14] Kamada, Tomihisa; Kawai, Satoru (1989), "An algorithm for drawing general undirected graphs", Information Processing Letters, Elsevier, 31 (1): 7–15.
[15] Freeman LC. Centrality in social networks: conceptual clarification, Soc. Networks, 1979, vol. 1 (pg. 215-239.
[16] Newman MEJ. The structure and function of complex networks, SIAM Rev, 2003, vol. 45 pg. 167.
[17] Freeman LC. A set of measures of centrality based on between’s, Sociometry, 1977, vol. 40 (pg. 35-41.
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How to Cite
Adimulam Yesu Babu, D., Deepak Nedunuri, D., & Venkata Sai Krishna, T. (2018). Network analysis as a method of assessing terms in a dataset comprising eating disorders. International Journal of Engineering & Technology, 7(2.7), 841-847. https://doi.org/10.14419/ijet.v7i2.7.11079Received date: 2018-04-05
Accepted date: 2018-04-05
Published date: 2018-03-18